App
Customer Support
NZD
Find Bookings
Trip.com
>
Cheap Flights
>
Philippines
>
Mimaropa
>
El Nido
>
Kota Kinabalu to El Nido flight
>
Kota Kinabalu to El Nido ENI Airport flight
Worldwide Coverage
Worldwide Coverage
Flights to over 5,000 cities
One-stop Service Guarantee
One-stop Service Guarantee
Price guaranteed upon confirmed payment, booking guaranteed once tickets issued
Secure Payment
Secure Payment
Convenient & reliable booking and payment system

Cheap Flights from Kota Kinabalu to El Nido ENI Airport

  • One way
  • Round-trip
      • BKI23:20
        7h 25m
        1 stop
        ENI06:45
        Kota Kinabalu - El Nido|Tue, May 13|Philippines AirAsia
        NZD 295NZD 453
        35% OFF
        35% OFF
        NZD 453NZD 295

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Tue, May 13, arriving at El Nido ENI Airport. One-way Prices start from NZD 295 including taxes and charges.

      • BKI23:20
        7h 25m
        1 stop
        ENI06:45
        Kota Kinabalu - El Nido|Sat, May 10|Philippines AirAsia
        NZD 297NZD 453
        35% OFF
        35% OFF
        NZD 453NZD 297

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Sat, May 10, arriving at El Nido ENI Airport. One-way Prices start from NZD 297 including taxes and charges.

      • BKI23:20
        8h 5m
        1 stop
        ENI07:25
        Kota Kinabalu - El Nido|Fri, May 9|Philippines AirAsia
        NZD 315NZD 453
        31% OFF
        31% OFF
        NZD 453NZD 315

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Fri, May 9, arriving at El Nido ENI Airport. One-way Prices start from NZD 315 including taxes and charges.

      • BKI18:55
        24h 40m
        1 stop
        ENI19:35
        Kota Kinabalu - El Nido|Wed, Mar 26|Philippines AirAsia
        NZD 318
        NZD 318

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Wed, Mar 26, arriving at El Nido ENI Airport. One-way Prices start from NZD 318 including taxes and charges.

      • BKI23:20
        6h 55m
        1 stop
        ENI06:15
        Kota Kinabalu - El Nido|Sun, May 18|Philippines AirAsia
        NZD 322
        NZD 322

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Sun, May 18, arriving at El Nido ENI Airport. One-way Prices start from NZD 322 including taxes and charges.

      • BKI01:45
        17h 45m
        1 stop
        ENI19:30
        Kota Kinabalu - El Nido|Sat, May 3|Philippines AirAsia
        NZD 341
        NZD 341

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Sat, May 3, arriving at El Nido ENI Airport. One-way Prices start from NZD 341 including taxes and charges.

      • BKI01:45
        17h 45m
        1 stop
        ENI19:30
        Kota Kinabalu - El Nido|Thu, May 8|Philippines AirAsia
        NZD 347
        NZD 347

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Thu, May 8, arriving at El Nido ENI Airport. One-way Prices start from NZD 347 including taxes and charges.

      • BKI01:45
        17h 45m
        1 stop
        ENI19:30
        Kota Kinabalu - El Nido|Tue, May 6|Philippines AirAsia
        NZD 348
        NZD 348

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Tue, May 6, arriving at El Nido ENI Airport. One-way Prices start from NZD 348 including taxes and charges.

      • BKI01:45
        17h 45m
        1 stop
        ENI19:30
        Kota Kinabalu - El Nido|Fri, May 2|Philippines AirAsia
        NZD 358
        NZD 358

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Fri, May 2, arriving at El Nido ENI Airport. One-way Prices start from NZD 358 including taxes and charges.

      • BKI01:45
        17h 45m
        1 stop
        ENI19:30
        Kota Kinabalu - El Nido|Thu, Apr 3|Philippines AirAsia
        NZD 360
        NZD 360

        Choose Philippines AirAsia flights from Kota Kinabalu to El Nido. The one-way connecting flight with Philippines AirAsia departs from Kota Kinabalu Intl. Airport on Thu, Apr 3, arriving at El Nido ENI Airport. One-way Prices start from NZD 360 including taxes and charges.

      • BKI1:00 PM
        3h 5m
        Nonstop
        ENI2:00 PM
        Kota Kinabalu - El Nido|Mon, Mar 31|Philippines AirAsia
        Find More Flights
        Find More Flights

Crossed out prices are calculated based on the average price of the corresponding route on Trip.com.

Airports in Kota Kinabalu

  • 1.5 km from central Kota Kinabalu
    Kota Kinabalu Intl. Airport
    Tickets From
    NZD 295

Flight Schedule from Kota Kinabalu to El Nido ENI Airport

Flight info.
Departure
Arrival
Weekly Schedule

  1. Z2502

    Philippines AirAsia

    01:45

    BKI

    2.2h

    03:55

    MNL

    S-T-T--
    Search

  2. T6172

    AirSWIFT AirLine

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS

  3. Z2502

    Philippines AirAsia

    01:45

    BKI

    2.2h

    03:55

    MNL

    S-T-T--
    Search

  4. T6126

    AirSWIFT AirLine

    10:00

    MNL

    1.5h

    11:30

    ENI

    SMTWTFS

  5. MH2603

    Malaysia Airlines

    06:50

    BKI

    2.6h

    09:25

    KUL

    S--WTFS
    Search

  6. MH804

    Malaysia Airlines

    17:25

    KUL

    4.0h

    21:25

    MNL

    SMTWTFS

  7. T6112

    AirSWIFT AirLine

    05:15

    MNL

    1.5h

    06:45

    ENI

    ------S

  8. BI822

    Royal Brunei Airlines

    08:50

    BKI

    0.7h

    09:30

    BWN

    -M--T-S
    Search

  9. BI685

    Royal Brunei Airlines

    18:20

    BWN

    2.4h

    20:45

    MNL

    S--WT--

  10. T6114

    AirSWIFT AirLine

    05:55

    MNL

    1.5h

    07:25

    ENI

    SMTWTFS

  11. BI822

    Royal Brunei Airlines

    08:50

    BKI

    0.7h

    09:30

    BWN

    -M--T-S
    Search

  12. BI685

    Royal Brunei Airlines

    18:20

    BWN

    2.4h

    20:45

    MNL

    S--WT--

  13. T6110

    AirSWIFT AirLine

    04:45

    MNL

    1.5h

    06:15

    ENI

    SMTWTFS

  14. AK237

    AirAsia

    09:50

    BKI

    2.8h

    12:40

    HKG

    SMTWTFS
    Search

  15. 5J121

    Cebu Pacific

    22:35

    HKG

    2.2h

    00:45

    CRK

    SMTWTFS

  16. DG6355

    Cebgo

    10:00

    CRK

    1.4h

    11:25

    ENI

    ------S

  17. TR493

    Scoot

    12:15

    BKI

    2.3h

    14:35

    SIN

    --T---S
    Search

  18. TR396

    Scoot

    01:45

    SIN

    3.8h

    05:30

    MNL

    SMTWTFS

  19. T6172

    AirSWIFT AirLine

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS

  20. TR491

    Scoot

    12:30

    BKI

    2.7h

    15:10

    SIN

    SM-W-F-
    Search

  21. TR396

    Scoot

    01:45

    SIN

    3.8h

    05:30

    MNL

    SMTWTFS

  22. T6126

    AirSWIFT AirLine

    10:00

    MNL

    1.5h

    11:30

    ENI

    SMTWTFS

  23. BI826

    Royal Brunei Airlines

    17:10

    BKI

    0.7h

    17:50

    BWN

    -----F-
    Search

  24. BI685

    Royal Brunei Airlines

    18:20

    BWN

    2.4h

    20:45

    MNL

    S--WT--

  25. T6110

    AirSWIFT AirLine

    04:45

    MNL

    1.5h

    06:15

    ENI

    SMTWTFS

  26. BI828

    Royal Brunei Airlines

    21:45

    BKI

    0.7h

    22:25

    BWN

    -M-WT-S
    Search

  27. BI683

    Royal Brunei Airlines

    11:45

    BWN

    2.4h

    14:10

    MNL

    --T----

  28. T6172

    AirSWIFT AirLine

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS
Find more flights and airlines

Flight Info of Flights from Kota Kinabalu to El Nido ENI Airport

Cheapest one-way flight priceNZD 295
Off-season for travelMarch
Peak season for travelDecember

FAQs for Kota Kinabalu to El Nido ENI Airport Flights

  • When are flight tickets from Kota Kinabalu (BKI) to El Nido (ENI) the cheapest?

    Airlines adjust prices for flights from Kota Kinabalu to El Nido based on the departure date and time of your selection. By analyzing data from all airlines, we've discovered that on Trip.com, you can find the lowest flight prices on Tuesdays, Wednesdays, and Saturdays.

  • How much do flights from Kota Kinabalu (BKI) to El Nido (ENI) cost?

    According to Trip.com's data, the lowest price is around NZD 689.

  • What is the transportation method from the main airport to downtown in El Nido?

    • The distance from El Nido ENI Airport to downtown is about 5 km. It takes about 20 minutes by taxi.

Contact Us

About

Other Services

Payment Methods
Our Partners
Copyright © 2025 Trip.com Travel Singapore Pte. Ltd. All rights reserved
Site Operator: Trip.com Travel Singapore Pte. Ltd.