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Ninoy Aquino International Airport to Kota Kinabalu flight
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Cheap Flights from Ninoy Aquino International Airport to Kota Kinabalu

Search for flights from Ninoy Aquino International Airport to Kota Kinabalu and check out affordable one-way and round-trip options.

  • One way
  • Round-trip
      • Cheapest nonstop
        MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Wed, Mar 5|Philippines AirAsia
        US$38US$241
        84% OFF
        84% OFF
        US$241US$38

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Wed, Mar 5, arriving at Kota Kinabalu International Airport. One-way Prices start from US$38 including taxes and charges.

      • MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Fri, Feb 14|Philippines AirAsia
        US$43US$241
        82% OFF
        82% OFF
        US$241US$43

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Fri, Feb 14, arriving at Kota Kinabalu International Airport. One-way Prices start from US$43 including taxes and charges.

      • MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Fri, Mar 14|Philippines AirAsia
        US$46US$241
        81% OFF
        81% OFF
        US$241US$46

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Fri, Mar 14, arriving at Kota Kinabalu International Airport. One-way Prices start from US$46 including taxes and charges.

      • MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Mon, Mar 24|Philippines AirAsia
        US$56
        US$56

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Mon, Mar 24, arriving at Kota Kinabalu International Airport. One-way Prices start from US$56 including taxes and charges.

      • MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Sun, Mar 9|Philippines AirAsia
        US$59
        US$59

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Sun, Mar 9, arriving at Kota Kinabalu International Airport. One-way Prices start from US$59 including taxes and charges.

      • MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Mon, Mar 10|Philippines AirAsia
        US$59
        US$59

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Mon, Mar 10, arriving at Kota Kinabalu International Airport. One-way Prices start from US$59 including taxes and charges.

      • MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Fri, Mar 7|Philippines AirAsia
        US$59
        US$59

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Fri, Mar 7, arriving at Kota Kinabalu International Airport. One-way Prices start from US$59 including taxes and charges.

      • MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Wed, Feb 26|Philippines AirAsia
        US$73
        US$73

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Wed, Feb 26, arriving at Kota Kinabalu International Airport. One-way Prices start from US$73 including taxes and charges.

      • MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Fri, Feb 21|Philippines AirAsia
        US$83
        US$83

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Fri, Feb 21, arriving at Kota Kinabalu International Airport. One-way Prices start from US$83 including taxes and charges.

      • MNL16:15
        2h 15m
        Nonstop
        BKI18:30
        Manila - Kota Kinabalu|Sun, Feb 23|Philippines AirAsia
        US$85
        US$85

        Choose Philippines AirAsia flights from Manila to Kota Kinabalu. The one-way direct flight with Philippines AirAsia departs from Ninoy Aquino International Airport on Sun, Feb 23, arriving at Kota Kinabalu International Airport. One-way Prices start from US$85 including taxes and charges.

      • MNL01:00 pm
        3h 5m
        Nonstop
        BKI02:00 pm
        Manila - Kota Kinabalu|Thu, Feb 20|Philippines AirAsia
        Find More Flights
        Find More Flights

Crossed out prices are calculated based on the average price of the corresponding route on Trip.com.

Selected Airlines from Ninoy Aquino International Airport to Kota Kinabalu

See which airlines fly from Ninoy Aquino International Airport to Kota Kinabalu. Find the airline that best meets your travel needs by comparing prices and treat yourself to an enjoyable journey.
Philippines AirAsia logoPhilippines AirAsiaCebu Pacific logoCebu Pacific

Airports in Kota Kinabalu

Learn about different airports in Kota Kinabalu, find the best flight and transfer options, and plan your journey.

  • 1.5 km from central Kota Kinabalu
    Kota Kinabalu International Airport
    Tickets From
    US$195

Flight Schedule from Ninoy Aquino International Airport to Kota Kinabalu

Check the schedule for flights from Ninoy Aquino International Airport to Kota Kinabalu and find the flight that best matches your travel plans.

Flight info.
Departure
Arrival
Weekly Schedule

  1. TR397

    Scoot

    06:55

    MNL

    3.6h

    10:30

    SIN

    SMTWTFS
    Search

  2. TR490

    Scoot

    09:00

    SIN

    2.5h

    11:30

    BKI

    SM-W-F-

  3. TR397

    Scoot

    06:55

    MNL

    3.6h

    10:30

    SIN

    SMTWTFS
    Search

  4. TR492

    Scoot

    16:45

    SIN

    2.4h

    19:10

    BKI

    --T-T-S

  5. Z2501

    Philippines AirAsia

    16:15

    MNL

    2.3h

    Nonstop

    18:30

    BKI

    S-T-T-S
    Search

  6. TR391

    Scoot

    19:30

    MNL

    4.0h

    23:30

    SIN

    SMTWTFS
    Search

  7. TR492

    Scoot

    16:45

    SIN

    2.4h

    19:10

    BKI

    --T-T-S

  8. TR391

    Scoot

    19:30

    MNL

    4.0h

    23:30

    SIN

    SMTWTFS
    Search

  9. TR490

    Scoot

    09:00

    SIN

    2.5h

    11:30

    BKI

    SM-W-F-

  10. 5J501

    Cebu Pacific

    20:05

    MNL

    4.1h

    00:10

    KUL

    SMTWTFS
    Search

  11. AK5110

    AirAsia

    08:35

    KUL

    2.7h

    11:15

    BKI

    SMTWTFS
Find more flights and airlines

Flight Info of Flights from Ninoy Aquino International Airport to Kota Kinabalu

Cheapest round-trip ticket price$79
Cheapest nonstop flight price$38
Off-season for travelJanuary
Peak season for travelMay

FAQs for Ninoy Aquino International Airport to Kota Kinabalu Flights

  • What is the transportation method from the main airport to downtown in Kota Kinabalu?

    • The distance from Kota Kinabalu International Airport to downtown is about 7 km. It takes about 20 minutes by taxi.

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